compute_de_table = helper function to create differential expression table

compute_de_table = helper function to create differential expression table

compute_de_table(adata, comp_types, test_types, obs_names, sc)

Arguments

adata

the anndata object

comp_types

what kind of comparisons? `allVrest` or `a V b`

test_types

statistical tests - t-test, etc

obs_names

name of the adata$obs column defining the comparision groups

sc

scanpy

Value

diff_exp, differential expression table

Examples

TODO
#> Error in eval(expr, envir, enclos): object 'TODO' not found